Package index • imuRUN

All functions

IMURUN_SCHEMA: Canonical imuGAP input schema
IMURUN_TARGET_SCHEMA: Target-request sheet schema
check_all_inputs(): Check that all required inputs are present
cli_run_fit(): Command-line interface dispatcher for imurun
expand_targets(): Expand a compact target-request sheet into explicit target rows
find_input_file(): Find and read a named input from a directory
imurun_copy_example(): Copy the bundled example workbook into a target directory
imurun_example(): Locate the bundled filled example workbook
imurun_init(): Initialize an imurun input workbook
imurun_template(): Locate the bundled blank template workbook
install_cli(): Install imurun CLI to PATH
load_by_ext(): Read a data file by its extension
parse_output_options(): Pull output-path options out of the command-line arguments
read_directory(): Read imuGAP inputs from a directory of loose files
read_inputs(): Read all imuGAP inputs from a directory or workbook
read_workbook(): Read all required sheets from an .xlsx workbook
run_fit(): Run the imurun fitting pipeline
summarize_targets(): Reduce posterior draws to a median and credible interval per target
validate_inputs(): Validate imurun inputs and report all problems at once
validate_targets(): Validate target-request rows against model extents and schema
write_results_csv(): Write the by-target results to a CSV
write_results_workbook(): Add results to the supplied workbook
write_workbook(): Write imurun inputs to an .xlsx workbook