Package index • SeverityEstimate

Synthetic Data

Helpers for generating and transforming example data used to explore the model.

calculate_observed_ifr_sir(): Calculate Active/Passive IFR/SIR From True IFR/SIR And Detection Rates
create_sample_linelist(): Create A Sample Line List

Constructors and accessors for defining a severity estimate model.

SeverityEstimateModel() summary(<SeverityEstimateModel>) print(<SeverityEstimateModel>) show(<SeverityEstimateModel>) print(<SummaryEstimateModel>): Severity Estimate Model
default_model(): Construct A Default Severity Model
detection() `detection<-`() has_detection() require_detection() set_detection(): Get Or Set Model Detection Mapping
outcome() `outcome<-`() has_outcome() require_outcome() set_outcome(): Get Or Set Model Outcome Mapping
strata() `strata<-`() set_strata(): Get Or Set Model Stratifications
timesteps() `timesteps<-`() has_timesteps() require_timesteps() set_timesteps(): Get Or Set Model Timesteps
active_prior() `active_prior<-`() set_active_prior() passive_asymptomatic_prior() `passive_asymptomatic_prior<-`() set_passive_asymptomatic_prior() passive_symptomatic_prior() `passive_symptomatic_prior<-`() set_passive_symptomatic_prior(): Get Or Set Model Prior Parameterizations

Fit a model and summarize posterior estimates.

print(<SeverityEstimateFit>) summary(<SeverityEstimateFit>) print(<SummaryEstimateFit>): Severity Estimate Fit Class
fit(): Fit a severity estimate model instance.
calculate_fatality_ratio(): Calculate Fatality Ratio Statistics
calculate_hazard(): Calculate Hazard Statistics
calculate_parameter_estimates(): Calculate Key Parameter Estimates